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  1. trackastra trackastra Public

    Transformer-based cell tracking for live-cell microscopy

    Python 143 32

  2. spotiflow spotiflow Public

    Accurate and efficient spot detection for microscopy data

    Python 138 21

  3. muvit muvit Public

    Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.

    Python 43 5

  4. tarrow tarrow Public

    Time arrow prediction for live-cell microscopy

    Python 22 7

  5. napari-spotiflow napari-spotiflow Public

    Spotiflow plugin for napari

    Python 19 1

  6. napari-trackastra napari-trackastra Public

    napari plugin for trackastra

    Python 18 3

Repositories

Showing 10 of 16 repositories
  • trackastra Public

    Transformer-based cell tracking for live-cell microscopy

    weigertlab/trackastra's past year of commit activity
    Python 143 BSD-3-Clause 32 3 1 Updated Aug 7, 2026
  • napari-trackastra Public

    napari plugin for trackastra

    weigertlab/napari-trackastra's past year of commit activity
    Python 18 BSD-3-Clause 3 2 0 Updated Jul 16, 2026
  • spotiflow Public

    Accurate and efficient spot detection for microscopy data

    weigertlab/spotiflow's past year of commit activity
    Python 138 BSD-3-Clause 21 5 1 Updated Jun 8, 2026
  • muvit Public

    Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.

    weigertlab/muvit's past year of commit activity
    Python 43 BSD-3-Clause 5 3 0 Updated Jun 7, 2026
  • napari-spotiflow Public

    Spotiflow plugin for napari

    weigertlab/napari-spotiflow's past year of commit activity
    Python 19 BSD-3-Clause 1 1 0 Updated May 19, 2026
  • DLAI_2025 Public

    course material

    weigertlab/DLAI_2025's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Feb 5, 2026
  • trackastra-models Public
    weigertlab/trackastra-models's past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Nov 13, 2025
  • spotiflow-models Public
    weigertlab/spotiflow-models's past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Sep 19, 2025
  • BCSS Public Forked from PathologyDataScience/BCSS

    Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourcing enables convolutional segmentation of histology images. Bioinformatics. 2019. doi: 10.1093/bioinformatics/btz083

    weigertlab/BCSS's past year of commit activity
    Python 0 MIT 24 0 0 Updated Sep 9, 2025
  • diffusion_model_tutorial Public
    weigertlab/diffusion_model_tutorial's past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Feb 15, 2025
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