This repository provides an example on how to implement a Snakemake workflow in an OSeMOSYS model.
All workshop information can be found in the Jupyter Notebook, workshop.ipynb.
Solutions to all examples are in the workshop/solutions/ folder.
The workflow has only been tested on Linux and UNIX machines. If you plan to run the code, install the conda environment using the command:
conda env create -f workflow/envs/env.yaml To view the Jupyter Notebook as slides, install jupyter and run the command:
conda install jupyter
jupyter nbconvert workshop.ipynb --to slides --post serve