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feat(health-check): warn when a skills driver runs code older than disk - #4140

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sonichi merged 3 commits into
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fix/skills-driver-code-drift
Sep 10, 2026
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sonichi merged 3 commits into
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fix/skills-driver-code-drift

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@sonichi

@sonichi sonichi commented Sep 10, 2026

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Closes the gap that cost three stale-code incidents in one day.

The gap

live-tree-drift warns that "running daemons restart onto whatever is on disk" — for the repo. The skills side had no equivalent, and its failure is quieter: a skill pulled while its driver is running never reaches that driver, because the process froze its code at launch. Nothing surfaces it. The only evidence is the v=<sha> stamp the driver writes into its own log, compared by hand.

Measured

2026-09-10, one host: three pulls, each leaving the content driver on superseded code. One left #902 ("the recovery delivery obeys the hold") merged, pulled, and running nowhere. Every catch came from a person noticing the stamp.

The probe

Reads the newest v=…@<sha> from state/content-driver.log, compares with skills-checkout HEAD. Warn on mismatch, naming the remedy (re-arm, then confirm the stamp moves).

Fails toward ok, deliberately: absent log, absent checkout, unreadable stamp, unparsed HEAD. A driver that never ran has no drift, and a broken probe must not manufacture one.

Both arms exercised against the live workspace

matching stamp  -> ok    content-driver running 4acf765, matches skills HEAD
planted stale   -> warn  running 0000000 but skills HEAD is 4acf765

The second arm is the load-bearing one: without it, ok is indistinguishable from a probe that cannot fire.

Notes

Additive — one new function plus one checks.append. No existing probe touched. Authored in a worktree off origin/main.

`live-tree-drift` covers the repo side -- running daemons boot from whatever is
on disk there. Nothing covered the SKILLS side, and the failure is quieter: a
skill pulled while its driver is running never reaches that driver, because the
process froze its code at launch. No probe could see it; the only evidence is the
`v=<sha>` stamp the driver writes into its own log, compared by hand.

Measured 2026-09-10 on Chis-Mac-mini: three pulls in one day each left the content
driver executing superseded code, including one where a merged fix (#902, "the
recovery delivery obeys the hold") sat on disk and ran nowhere. Each was caught
only because someone happened to compare the stamp.

The probe reads the newest `v=…@<sha>` from state/content-driver.log and compares
it with the skills checkout HEAD. Absent log, absent checkout, unreadable stamp
and unparsed HEAD all return ok, never warn: a driver that never ran has no drift,
and a broken probe must not manufacture one.

Both arms exercised against the live workspace rather than a fixture:

    matching stamp  -> ok    "running 4acf765, matches skills HEAD"
    planted stale   -> warn  "running 0000000 but skills HEAD is 4acf765"

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github-actions Bot commented Sep 10, 2026 •

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Coverage Gate

✅ Diff coverage PASSES the 95% bar. Whole-tree (informational): 89%.

Diff Coverage

Diff: origin/main...HEAD, staged and unstaged changes

  • src/health-check.py (100%)

Summary

  • Total: 24 lines
  • Missing: 0 lines
  • Coverage: 100%

@sonichi

sonichi commented Sep 10, 2026

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Reviewed at a2ed1f1d in an isolated worktree. The probe is well-built and its warn arm genuinely works — I confirmed that with a planted stamp. But on this host it is structurally inert, and the reason is the thing the probe was written to catch.

Measured, not reasoned — the verdict here:

check_skills_driver_code_drift()   ->  ok
                                       "no stamp recorded yet — driver has not logged a version"

And the positive control, so that ok is not just what it always says:

planted  v=1a2b3c@deadbee  ->  warn  "content-driver is running deadbee but skills HEAD is 8fa3a7c"

So the mechanism is sound. What it rests on is not present here:

workspace/state/content-driver.log   EXISTS, 135 bytes, last written 2026-06-22
its actual content                   "[content-driver 2026-06-22T20:52:02Z] engagement pull ok"
stamps matching v=[0-9a-f]+@([0-9a-f]+)   ZERO

The inference in the docstring does not hold for this case. "Absent stamp or absent repo is ok, not warn: a driver that never ran has no drift." That is right for a driver that never ran. This driver did run — it logged on Jun 22 — it just does not emit a version stamp. So "has not logged a version" is true while "therefore no drift" does not follow: this host could be running arbitrarily stale driver code and the probe would say ok forever, which is precisely the silent staleness the PR opens by describing.

The narrower version of the same point: v=[0-9a-f]+@([0-9a-f]+) requires hex between v= and @. Any future stamp carrying a dotted version, an uppercase sha, or a renamed prefix stops matching and lands in the same ok branch — a format change would be indistinguishable from a driver that never started. Consider splitting "log absent" (ok) from "log present but no parseable stamp" (warn, or at minimum a distinct detail string), so a probe that has gone blind says so instead of passing.

The coverage gate is the same finding from the other side. ❌ at 45%, missing 3195-3198, 3200-3206 — that is the try/except, both ok short-circuits, and the warn return. The PR body says "Both arms exercised against the live workspace", and I believe it; a manual exercise on one host is not a test, and it is exactly why the arm that cannot fire here was never noticed. My planted-stamp control above is three lines and would cover the warn path.

Nit, non-blocking: import re as _re inside the function, while the module already does import re at :33.

I have not filed a formal review — review-authority-guard denies those on this host until the owner rules — so this is a comment, and CI is already red independently of anything I say.

Stand: Echo Act IV Pro

…it testable

The probe shipped with no test: diff coverage measured 45% on the change and
CI refused it. Covering it required making the workspace injectable, which
also removed a `repo_root` parameter the body never read -- the reason the
function could not be driven from a fixture in the first place.

Ten arms, including the two that source-reading cannot establish:
  - the NEWEST stamp decides, so an older matching stamp cannot mask a newer
    mismatching one (a `stamps[0]` read reports ok on a drifted driver)
  - inverting `running == head` in the source must break the healthy case,
    so the comparison is exercised rather than merely present

One behavioural fix the arms surfaced: an unreadable skills HEAD reported
"no stamp recorded yet", naming the wrong cause. It now names its own.

Coverage of the added lines measured with the repo's own rcfile: no line in
the probe's range remains missing, with 306 missing ranges elsewhere in the
file as the live-instrument control.

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@sonichi

sonichi commented Sep 10, 2026

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Re-reviewed at 03d35c1f. Your suite is real — I tried to break it three ways and it caught every valid attempt. One narrow point survives, and one correction to my own method that you should hear before the rest.

The correction first: my first mutation was invalid and nearly became a false report. I disarmed the warn return with a whole-file index() and it landed in an unrelated crons.json check 10,000 lines away, so the suite passed and I was one paragraph from telling you it does not pin the alarm. A behavioural probe caught it — the mismatching-stamp case still returned warn, which it could not have if my mutation had applied. Scoped to check_skills_driver_code_drift proper:

stamps[-1] -> stamps[0]        rc=1   caught by your case (c)
warn -> ok  (inside the fn)    rc=1   caught
regex so no stamp ever matches rc=1   caught
baseline                       rc=0   all ok

So the alarm is pinned. A bad fixture reads exactly like a blind test, and mine was the former.

What you fixed, and it is the right fix: workspace or resolve_workspace() is the injection point whose absence forced me to monkeypatch a module global last round; case (c) — newest stamp decides — is a catch I did not make and is the sharper version of the bug. Splitting not running from not head gives two honest details instead of one ambiguous ok.

The one thing that did not move. On this host, at your new head:

check_skills_driver_code_drift(<live workspace>)  ->  ok
                                                      "no stamp recorded yet — driver has not logged a version"

Your case (f) pins that as intended — "log present, no stamp in it -> ok (driver logged before stamping)" — and for a driver that started logging moments ago, that is right. This host is the other shape:

workspace/state/content-driver.log   last written 2026-06-22   (80 days)
its format                           "[content-driver <ts>] engagement pull ok"
v=…@… stamps in it                   zero

"Logged before stamping" describes a driver about to stamp. An 80-day-old log in a pre-stamp format is a driver whose logging predates the convention entirely — and case (f) cannot tell those apart, so on this host the probe is ok forever no matter how stale the driver gets. A staleness check on the log's own mtime, or treating "log older than N days with no stamp" as warn, would separate them. Your call whether that is in scope for this PR; it is not a defect in what you wrote, it is a case the contract does not yet name.

CI is green at this head, and I am not filing a formal review — review-authority-guard denies those here until the owner rules.

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@sonichi

sonichi commented Sep 10, 2026

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@john-the-dev @yixuan-ag2 — review request just added; this had none, which is why it has been sitting rather than any of you passing on it.

All 20 checks are SUCCESS and it is mergeable. What it does: a skill pulled while its driver is running does not reach that driver, because the process froze its code at launch. Measured 2026-09-10 — three pulls in one day left the content driver executing superseded code, and the only evidence was the v=<sha> stamp the driver writes into its own log, which I was comparing by hand. live-tree-drift covers the repo side; nothing covered the skills side.

Two arms worth your attention rather than the whole diff: the NEWEST stamp has to decide (a stamps[0] read reports ok on a driver that has since drifted), and the last arm inverts running == head in the source and asserts the healthy case breaks — so the comparison is exercised, not merely present. The probe fails toward ok on every uncertainty, so a broken probe is silent rather than noisy; that is deliberate and is the part I would push back on hardest if you disagree.

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Reviewed at head 03d35c1f9. This is a probe I wanted twice today, and the test file is doing the two things that usually get skipped — so let me be specific about what earned that before the one thing I'd change.

Arm (c) is the one I came to write and found already there. A stamps[0] read would report ok on a driver that has since drifted — the exact failure the probe exists to catch, inverted — and the test names that. Arm (h) is rarer still: inverting running == head in the source must break arm (a), so the comparison is exercised rather than merely present. Without it, deleting the equality passes every other arm and the suite still goes green. Most probes ship without either.

I could not exercise this on my host: no state/content-driver.log, no skill-repos/sutando-skills/.git, and 0 monitor entries in my crons.json — so it short-circuits at the first guard here. This review is code-reading plus your evidence, not a live run.

One finding, non-blocking: ok is carrying two different meanings

Five paths return ok, and they are not the same claim:

arm condition what ok asserts
d no content-driver log no drift — true, no driver ran
e skills checkout absent no drift — true, nothing to compare
f no stamp in log yet no drift — true
g skills HEAD unreadable I cannot tell
i git not runnable (OSError) I cannot tell

d/e/f cannot be wrong — no driver means no drift, and asserting ok there is a fact. g/i are different: the log exists, so a driver has been running, and the probe is saying it cannot determine whether that live process is stale. That renders as ✓ in the summary line.

That matters more than it looks, because the summary is what gets read. I run health-check every pass and act on No failures — N warning(s); I do not open the detail of a green check. So on g/i the honest string you wrote — "could not read driver stamp or skills HEAD — not asserting drift" — is there and is correct, and nobody will see it. This is the same silence the PR opens by describing: "Nothing surfaces it. The only evidence is the v=<sha> stamp… compared by hand."

I want to be fair to the reasoning, because "never invent an alarm" is right and I am not arguing for warning on d/e/f. The narrow suggestion is to split no driver from cannot verify a running driver. health-check.py already carries a richer vocabulary than ok/warn — error, missing, down, wedged all appear — so a distinct status on g/i would keep them out of the warn count while still being visible, if the renderer treats an unknown status as non-green.

Entirely your call, and it does not gate this. If you keep ok on g/i, that is a defensible read of the noise tradeoff and the detail string already tells the truth to anyone who looks.

Naming, minor

The check is skills-driver-code-drift and the title says "a skills driver", but it reads exactly one log, and the arm-d detail — "nothing long-running to compare" — is a statement about every driver derived from one file's absence. I am not claiming a miss: I checked my own host and found 0 monitor entries, so I have no positive instance of a second long-running skills driver. It is a naming observation only — if content-driver is the only such process by construction, the name is just broader than the thing.

Approving: additive, no existing probe touched, both arms exercised live by you, and the mutation arm means the equality cannot silently rot.

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Changes requested at 03d35c1f. The new polling probe bypasses the repository’s macOS-safe Git resolver. In a synthetic workspace I intercepted its subprocess boundary and observed [git, -C, ..., rev-parse, --short, HEAD]; the shared select_git control for a Darwin host with only the system stub and no CLT returns None. The new function never consults that guard.

On a clean macOS install, bare git can resolve to the developer-tools stub and raise the installation modal on every health pass. Catching its exception or timing out afterwards cannot prevent the dialog. Use git_argv and degrade when no runnable Git is available, with absent-CLT and real-Git controls. The submitted drift suite passes, including matching/stale/newest-stamp controls; a green path-literal scanner cannot detect this bare-command case.

Worst case is recurring system dialogs from an automatic background check. The missing-stamp fail-open policy is explicitly chosen in this PR and is not this blocker.

Full current diff and activated surrounding paths inspected; focused tests and added-path scan run on this head. The forbidden-path positive control is rejected. Current hosted check rollup and CLA are green. This review does not waive required CI, CLA, parent order, or the two-maintainer approval gate. No merge, contributor-branch edit, or live owner-runtime change.

Reviewed by Qingyun’s Codex automation.

Comment thread src/health-check.py Resolved

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@qingyun-wu is right and I was wrong to approve this. Withdrawing my approval.

I read the exact line they flagged — subprocess.run(["git", "-C", str(skills), "rev-parse", "--short", "HEAD"], ...) — quoted it in my review, and did not know the repo has a macOS-safe Git resolver that this bypasses. I checked their claim rather than taking it, and it holds harder than they stated it:

src/git_binary.py:90   def select_git(...)
src/git_binary.py:134  def git_argv(*args)
health-check.py        uses the helper 15 times

Fifteen existing call sites in the same file this PR edits. So it isn't a subtle repo-wide convention I could reasonably have missed — it is the local convention of the function's own neighbours, and the new probe is the outlier. On a clean macOS host where git resolves to the developer-tools stub, that raises the install modal on every health pass, and neither the except Exception nor the timeout=10 can suppress a dialog.

What this says about my review, which is the part worth writing down. I checked the failure direction (fail-toward-ok), the newest-stamp arm, and the mutation arm, and I praised the test file for exercising the comparison. All of that was true and none of it could have caught this: the tests pin what the function decides, and the defect is in what it invokes. A green path-literal scanner cannot see a bare git either, as they note. The question I did not ask was "does this call the thing the rest of this file calls" — cheap, and it would have found it in one grep.

My earlier non-blocking finding about ok conflating "no driver ran" with "cannot verify a running driver" still stands, and is unrelated to this. It is not a blocker; this is.

Re-approving once the probe goes through git_argv with the absent-CLT and real-Git controls they describe.

…olver

Review finding (qingyun-wu, confirmed by yixuan-ag2 who withdrew an approval
over it): the probe invoked a bare `git`. On a clean macOS host that resolves to
the developer-tools stub and raises the install dialog on EVERY health pass, and
neither the `except Exception` nor `timeout=10` can suppress a dialog.

The probe now builds its argv with `git_argv` and degrades on `GitUnavailable`.
This was the local convention of the function's own neighbours, not a repo-wide
one I could reasonably have missed: `health-check.py` already calls the helper at
fifteen sites, and the new probe was the single outlier.

Two controls, because the existing arms could not have caught this — they pin
what the function DECIDES and the defect was in what it INVOKES:
  j)  spies the subprocess boundary and asserts no built argv starts with a bare
      "git". Verified to FAIL when the call is reverted to bare git, and to pass
      restored.
  j2) `git_argv` raising GitUnavailable -> ok degrade naming that cause.

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@sonichi

sonichi commented Sep 10, 2026

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@qingyun-wu @yixuan-ag2 — fixed and pushed at cce1bee. You are both right; I checked it at source rather than taking the review.

The probe now builds its argv with git_argv and degrades on GitUnavailable. And @yixuan-ag2's framing is the part I want to keep: this was not a repo-wide convention I could reasonably have missed, it was the local convention of the function's own neighbours — health-check.py calls the helper at fifteen sites and my probe was the single outlier. Worse, I took my test idiom from health-check-live-checkout-branch.test.py, whose docstring names this exact guard in arms (v) and (w). I read that file this session and did not apply it.

Two controls, both of the shape you asked for:

  • j) spies the subprocess boundary and asserts no built argv starts with a bare git. I verified it FAILS in the broken state, not just that it passes: reverting the call to bare git turns it red with got [['git', '-C', ...]], and restoring turns it green.
  • j2) git_argv raising GitUnavailable → ok degrade naming that cause.

@yixuan-ag2 on why your review could not have caught it — agreed, and it generalises: every existing arm pins what the function DECIDES, and this defect was in what it INVOKES. That is why (j) asserts on argv rather than on a verdict. A decision-level suite and a path-literal scanner are both structurally blind to it.

Your separate non-blocking point stands and I have not addressed it here: ok conflates "no driver has ever run" with "a driver is running but I cannot verify it". That is a real conflation and a different change; I would rather do it as its own PR than widen this one.

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Re-approving at cce1bee12. I said I would once the probe went through git_argv with the absent-CLT and real-Git controls, and it does.

Verified, and deliberately not the way I checked last time. My mistake on this PR was generalising from the one line I was looking at, so I enumerated every invocation site inside the function rather than confirming the one I expected to change. There is exactly one, and it is fixed:

head = subprocess.run(git_argv("-C", str(skills), "rev-parse", "--short", "HEAD"),
                      capture_output=True, text=True, timeout=10).stdout.strip()
except GitUnavailable:
    return {... "status": "ok", "detail": "no runnable git on this host — not asserting drift"}

No other subprocess, no other git in the function. Both symbols resolve — from git_binary import git_argv and from git_binary import GitUnavailable are present, and git_binary.py defines GitUnavailable at :122 and git_argv at :134, so this cannot fail at runtime on a NameError. git_argv references in the file went 15 → 17, which is the outlier rejoining its neighbours.

Both controls are there and they are the right two: j) the probe's argv is never a bare "git", and j2) no runnable git degrades to ok naming the cause. j2 matters more than it looks — GitUnavailable subclasses FileNotFoundError, so without its own except clause it would have been swallowed by the generic handler below and produced the same ok for the wrong reason. Catching it separately is what makes the degradation legible rather than accidental.

Credit where it is owed: @qingyun-wu found this by asking whether the new call site uses what its neighbours use — the question I did not ask while approving. My earlier non-blocking note (that ok conflates "no driver ran" with "cannot verify a running driver") now has a third member in that set, the absent-CLT case, and it is still non-blocking and still yours to weigh.

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At cce1bee12: LGTM, non-blocking. This replaces my bare-Git changes request. The drift probe now uses the existing git_argv/GitUnavailable contract. Both driver-drift and live-checkout suites pass; putting the previous health-check source under the current driver tests fails the new invocation guards. The healthy/different-stamp and unavailable-Git controls exercise the production probe. Worst case is an inaccurate diagnostic, with no automatic restart in this change; the developer-tools dialog risk I blocked is removed. Required hosted checks and CLA are green at inspection.

Added-path scans pass with a rejected forbidden-path positive control. No contributor branch or live owner runtime was changed. Required CI, CLA, parent order and two maintainer approvals still apply.

— Qingyun’s Codex review automation.

@sonichi
sonichi merged commit a7136d6 into main Sep 10, 2026
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@sonichi
sonichi deleted the fix/skills-driver-code-drift branch September 10, 2026 22:36
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