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📕 Documentation: Dictionary.xml and DictionaryDescription.md of: eoPlantPart #83
Description
Here we describe the process of creating a [DictionaryName]DictionaryDescription.md document, within which we will describe the contents of the individual dictionary (named in the title of this Issue), which was created (or is in the process of being created) from data collected for Oil186.
I will begin this thread by pasting the contents of the INDEX description, then follwed by first draft copy below for discussion and direction.
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EmanuelFaria commentedon Jan 28, 2020
Plant Parts
PlantPartsDictionaryDescription.md
Description: A dictionary of [XX] part(s) of a plant from which Essential Oils — mentioned in the 186 test articles downloaded from PubMed — were extracted.
Filename: plantParts20191014.xml
File Location: https://github.com/petermr/CEVOpen/blob/master/dictionary/plantparts/raw/plantParts20191014.xml
EmanuelFaria commentedon Jan 28, 2020
Plant Parts Dictionary
A dictionary of [XX] part(s) of a plant from which Essential Oils — mentioned in the 186 test articles downloaded from PubMed — were extracted.
File Data
Filename: plantParts20191014.xml
File Location: https://github.com/petermr/CEVOpen/blob/master/dictionary/plantparts/raw/plantParts20191014.xml
Table Column Headings
title: type of data to be normalized and tagged with Wikidata ID. In this case, “plantParts"
description: Short description of the plant part being identified in that row
id:
name: a human readable string describing the concept.
term: the precise string used to identify the concept. (Name and Term are often the same.)
wikidata: Unique identifier for each normalized dictionary term, linked to Wikidata.org — a free and open knowledge base that can be read and edited by both humans and machines.
wikipedia:
query:
Contents/Results
No. of source papers: ??
No. of Entries (Headers are not counted): 18
No. of unique entries (including alternate spellings or synonyms): 18
No. of Chemical Compounds resolved in Wikidata: ????
No. of Chemical Compounds NOT resolved in Wikidata: ???
Notes:
More work needs to be done on this dictionary.
Errors?
This is the first case where the column heading “description” means something other than "data source / method of input"
In this case, is the column heading “id” related to Essoil? I don’t know how to describe it here. The format is: CM.plantParts.n where n is a serialized number
I don’t know how to describe the column headings for “Wikipedia” or “query” in this case
[-]📕 Documentation: DictionaryDescription of: Plant Parts[/-][+]📕 Documentation: DictionaryDescription of: PlantParts[/+]EmanuelFaria commentedon Feb 22, 2020
Currently, the plantparts.xml data is sparse.
I found this list (https://www.collinsdictionary.com/word-lists/plant-parts-of-plants) that provides many more entries, and will incorporate them into the dictionary, along with WikidataIDs where available. As a placeholder, I've created plantParts20200222.xlsx in the CVEOpen/dictionary/plantparts/ directory, and pasted the list from above to work with.
@petermr I will likely need Gita to verify or supply a better source for this list of terms.
EmanuelFaria commentedon Mar 13, 2020
Plant Parts Dictionary is now complete and online
Next I'll update the results data for it's dictionary description .md file
[-]📕 Documentation: DictionaryDescription of: PlantParts[/-][+]📕 Documentation: Dictionary.xml and DictionaryDescription.md of: eoPlantPart[/+]EmanuelFaria commentedon Mar 25, 2020
As of today, I believe this dictionary and it's description document are complete. Below I will copy the contents of the description document:
EO Plant Part Dictionary
File Data
Description: A dictionary of 285 plant part terms.
Filename: eoPlantPart.xml
File Location: https://github.com/petermr/CEVOpen/blob/master/dictionary/eoPlantPart/eoPlantPart.xml
Table Column Headings
id: serialized identifier
name: a human readable string describing the concept.
term: the precise string used to identify the concept. (Name and Term are often the same.)
wikidata: Unique identifier for each normalized dictionary term, linked to Wikidata.org — a free and open knowledge base that can be read and edited by both humans and machines.
description: Short description of the plant part being identified in that row
Contents/Results
No. of Entries (Headers are not counted): 285
No. of unique entries (including alternate spellings or synonyms): 285
No. of entries resolved in Wikidata: 231
Notes: