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  1. boltzina boltzina Public

    Boltzina: Efficient and Accurate Virtual Screening via Docking-Guided Binding Prediction with Boltz-2

    Python 100 10

  2. QEPPI QEPPI Public

    Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions

    Python 20 8

  3. PairMap PairMap Public

    PairMap: An Intermediate Insertion Approach for Improving the Accuracy of Relative Free Energy Perturbation Calculations for Distant Compound Transformations

    Python 17

  4. SpatialPPIv2 SpatialPPIv2 Public

    SpatialPPIv2: Enhancing protein–protein interaction prediction through graph neural networks with protein language models.

    Python 28 4

  5. MMGX MMGX Public

    MMGX: Multiple Molecular Graph eXplainable Discovery

    Jupyter Notebook 22 5

  6. npgpt npgpt Public

    NPGPT: Natural Product-Like Compound Generation with GPT-based Chemical Language Models

    Jupyter Notebook 15 2

Repositories

Showing 10 of 32 repositories
  • ProtMutMap Public
    ohuelab/ProtMutMap's past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Sep 26, 2026
  • CatTransVAE Public

    Catalyst-specialized chemical language model (CLM) based on a Transformer variational autoencoder (VAE)

    ohuelab/CatTransVAE's past year of commit activity
    Python 5 MIT 0 0 0 Updated Sep 24, 2026
  • BoltzFT Public
    ohuelab/BoltzFT's past year of commit activity
    Python 1 MIT 0 1 0 Updated Sep 20, 2026
  • PATROL Public
    ohuelab/PATROL's past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 23, 2026
  • clamnp Public

    Natural product-likeness scoring with chemical language models

    ohuelab/clamnp's past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 23, 2026
  • PairMap2 Public
    ohuelab/PairMap2's past year of commit activity
    Python 2 MIT 0 0 0 Updated May 16, 2026
  • boltzina Public

    Boltzina: Efficient and Accurate Virtual Screening via Docking-Guided Binding Prediction with Boltz-2

    ohuelab/boltzina's past year of commit activity
    Python 100 MIT 10 3 0 Updated May 16, 2026
  • GraphBioisostere Public

    Masunaga, S., Furui, K., Kengkanna, A., Ohue, M. GraphBioisostere: general bioisostere prediction model with deep graph neural network. J Supercomput 82, 132 (2026).

    ohuelab/GraphBioisostere's past year of commit activity
    Jupyter Notebook 0 Apache-2.0 1 0 0 Updated Apr 30, 2026
  • MMGX Public

    MMGX: Multiple Molecular Graph eXplainable Discovery

    ohuelab/MMGX's past year of commit activity
    Jupyter Notebook 22 Apache-2.0 5 0 0 Updated Apr 28, 2026
  • ColabFold-cycpep-dock Public Forked from sokrypton/ColabFold

    Making Protein folding accessible to all!

    ohuelab/ColabFold-cycpep-dock's past year of commit activity
    Jupyter Notebook 26 MIT 759 3 0 Updated Mar 22, 2026

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