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1. covid19_scenarios covid19_scenarios Public

   Models of COVID-19 outbreak trajectories and hospital demand

   JavaScript 1.4k 344

2. treetime treetime Public

   Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

   Jupyter Notebook 257 61

3. pan-genome-analysis pan-genome-analysis Public

   Processing pipeline for pan-genome visulization and exploration

   Python 147 38

4. pangraph pangraph Public

   A bioinformatic toolkit to align genome assemblies into pangenome graphs

   C 129 6

5. SARS-CoV-2_variant-reports SARS-CoV-2_variant-reports Public

   Informal summaries of notable SARS-CoV-2 lineages

   112 12

6. pan-genome-visualization pan-genome-visualization Public

   Forked from wdingx/pan-genome-visualization

   Visualization of the pan-genome output by panX

   JavaScript 70 16