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1. whereismyslice whereismyslice Public

   Localize human brain histology sections in 3D MRI space with cross-modal embeddings. Trained on synthetic pairs from reslicing BigBrain + MRI at random oblique angles (no manual labels). Retrieves …

   Python

2. ANTsX/ANTsPy ANTsX/ANTsPy Public

   A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.

   Python 893 185

3. brain-score/vision brain-score/vision Public

   A framework for evaluating models on their alignment to brain and behavioral measurements (100+ benchmarks)

   Python 199 109

4. FireANTs FireANTs Public

   Forked from rohitrango/FireANTs

   [Nature Communications] Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration

   Python

5. Deep-MI/FastSurfer Deep-MI/FastSurfer Public

   PyTorch implementation of FastSurferCNN

   Python 649 162

6. khanlab/hippunfold khanlab/hippunfold Public

   BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

   Python 70 25