💻 I’m currently developing scalable workflows and tools to analyze and process spatial omics and single-cell multi-omics data.
- StoatyDive: A tool to evaluate and classify predicted peak profiles to assess the binding specificity of a protein to its targets.
- LiMetrack: Lightweight, modular biosample management platform designed to streamline centralized research data handling and sample tracking within biomedical research projects.
- nf-core/spatialaxe: Nextlfow Xenium data processing pipeline.
- Spatial Omics Marker gene detection workflow: Galaxy spatial omics gene pane design workflow.
- Galaxy CLIP Explorer: A webserver to process, analyse and visualise CLIP-Seq data.
- ATAC-Seq workflow: Galaxy ATAC-Seq data processing workflow, together with the Galaxy ATAC-Seq training material ATAC-Seq data analysis.
- CUT&RUN workflow: Galaxy CUT&RUN data processing worfklow, together with the Galaxy CUT&RUN training material CUT&RUN data analysis.
- nf-core/variantbenchmarking: A standardized Nextflow pipeline for benchmarking variant-calling workflows, enabling reproducible and FAIR analysis.
- nf-core/scrnaseq: Bioinformatics best-practice analysis pipeline for processing 10x Genomics single-cell RNA-seq data.
- SACCELERATOR: A flexible framework for applying spatially aware clustering methods.
- nf-core/mcmicro: Nextflow pipeline for processing highly-multiplexed imaging data, as produced by technologies such as Cycif, MIBI, CODEX, SeqIF among others.
- Email: florian.heyl@dkfz-heidelberg.de
- LinkedIn: https://www.linkedin.com/in/florian-heyl/