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Annotation lesson -- change to Annotation Hub? #16
Description
Currently we use AnnotationDbi
We might want to change to AnnotationHub as we use in the DGE lesson, however this becomes a longer lesson since we need to describe the one-to-many mappings (as a list) issue for the Entrez Ids
Another option is to consider adding bioMart back in
Activity
mistrm82 commentedon Mar 30, 2021
Also, currently we link to this page for AnnotationHub: https://github.com/hbctraining/Training-modules/blob/master/DGE-functional-analysis/lessons/AnnotationHub.md
I think this should be updated to have code that walks through the same dataset used in-class to demonstrate how you would do it with AnnotationHub