Easy access to a small collection of benchmark datasets for methods development.
Why do we need data benchmarks? Contribution guide
Instructions for downloading and loading each dataset are in text files in the datasets folder.
- Loyale Developing mouse retina - 10x single cell RNA-seq data from the developing mouse retina. Code repo | Download instructions #retina #mouse #umi #10x #droplet
- Tabula Muris - 20 different mouse organs, both full transcript (SmartSeq2) and UMI-based droplet counting (10x Genomics). Code repo | Vignette repo | Interactive website | Download instructions #mouse #aorta #bladder #brain #diaphragm #fat #heart #kidney #large_intestine #muscle #liver #lung #mammary_gland #marrow #pancreas #skin #spleen #thymus #tongue #rnaseq #smartseq2 #10x #umi #droplet
- Human cortex development - 4000 SmartSeq2 cells from different locations of the developing human fetus.
- Conquer - 38 datasets summarized to a count level available as
RMultiAssayExperimentobjects. - CellBench pilot data set - mixture data set from 3 human lung adenocarcinoma cell lines (HCC827, H1975 and H2228) across different platforms.
- Example dataset - 1-2 sentence summary of dataset. Code Repo | Vignette Repo | Interactive Website | Download instructions #mouse
- Example dataset - 1-2 sentence summary of dataset. Code Repo | Vignette Repo | Interactive Website | Download instructions #mouse