Skip to content

Fix get_prot_nuc_frame checking only the first frame atom #7

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
SID-6921 wants to merge 1 commit into
base: main
Choose a base branch
from
+1 −3
Open

Fix get_prot_nuc_frame checking only the first frame atom #7

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 1 addition & 3 deletions rnapro/data/featurizer.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -182,9 +182,7 @@ def get_prot_nuc_frame(token: Token, centre_atom: Atom) -> tuple[int, list[int]]

idx_in_atom_indices = []
for i in abc_atom_name:
if centre_atom.mol_type == "protein" and "N" not in token.atom_names:
return 0, [-1, -1, -1]
elif centre_atom.mol_type != "protein" and "C1'" not in token.atom_names:
if i not in token.atom_names:
return 0, [-1, -1, -1]
idx_in_atom_indices.append(token.atom_names.index(i))
# Protein/DNA/RNA always has frame
Expand Down