Repository navigation
Conversation
Synchronize dev with main
Bump version to 0.11.0-alpha.1
kdiers
marked this pull request as ready for review
August 12, 2026 13:13
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This pull request refactors and improves the quality control (QC) image generation in the pipeline, replacing the previous Plotly/Kaleido-based approach with a new implementation using Matplotlib and PyVista. It also updates Docker and Singularity documentation and dependencies to reflect these changes, and adds support for new QC stages. The most important changes are grouped below:
QC image generation refactor and enhancements:
qcPlotsinhipsta/utils/qc_plots.pyto use Matplotlib for 2D profile plots and PyVista for 3D mesh screenshots, replacing Plotly/Kaleido and the oldlapy.plotbackend. Added a new_renderTriaMeshhelper for rendering meshes, and introduced support for a new "mid-surface" QC stage. Improved docstrings and code structure throughout.hipsta/hipsta.pyto callqcPlotsfor the new "mid-surface" stage.Docker and dependency updates:
libosmesa6for offscreen rendering with PyVista.Singularity and documentation improvements:
--no-qcrecommendation, as QC rendering is now supported in headless environments. Also added--no-mount home,cwd -eto recommended invocation for improved reproducibility.