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Preserve zarr version during reconstruction #240

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@ieivanov

biahub reconstruction calls should create output zarr stores that match the version of the input zarr store, i.e. v2->v2, v3->v3.

We should add config parameters that allow us to override this default behavior, allowing for v2 input and v3 output.

Test:

  • Added output_ome_zarr_version config parameter to all recon steps
  • Verified that mantis data is reconstructed in zarr v3 (i.e. v3 > v3)
  • Verified that for mantis datasets, recon can be downgraded to v2 (i.e. v3 > v2)
  • Verify that Dragonfly datasets are constricted in zarr v2 by default
  • Verify that Dragonfly datasets can be reconstructed in zarr v3 (i.e. v2 > v3)
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