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Fix predicting new channels in an existing store #57

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Merged
ziw-liu merged 1 commit into from
Sep 29, 2023
Merged

Fix predicting new channels in an existing store #57

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7 changes: 4 additions & 3 deletions viscy/light/predict_writer.py
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Original file line number Diff line number Diff line change
Expand Up @@ -78,10 +78,11 @@ def on_predict_start(self, trainer: Trainer, pl_module: LightningModule) -> None
"Cannot write input to an existing store. Aborting."
)
else:
with open_ome_zarr(self.output_store, mode="r+") as plate:
for _, pos in plate.positions():
for ch in prediction_channel:
pos.append_channel(ch, resize_arrays=True)
self.plate = open_ome_zarr(self.output_store, mode="r+")
for _, pos in self.plate.positions():
for ch in prediction_channel:
pos.append_channel(ch, resize_arrays=True)
else:
channel_names = prediction_channel
if self.write_input:
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