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Biohub
VisCy
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feat(dynacell): Spotlight v2 topology losses (SAUNA-map Dice, soft-clDice) and ER/mito arms
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Oct 4, 2026
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feat(dynacell): Spotlight v2 topology losses (SAUNA-map Dice, soft-clDice) and ER/mito arms
#521
alxndrkalinin
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dynacell-models
Biohub/VisCy:dynacell-models
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dynacell-spotlight-topology-loss
Biohub/VisCy:dynacell-spotlight-topology-loss
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feat(viscy-utils): add SAUNA weighting and soft-clDice to SegAuxDice
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feat(dynacell): add Spotlight v2 topology arms and ER/mito baselines
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feat(dynacell): add Spotlight v2 segaux and topology arms for ER and mito
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test(dynacell): count the ER and mito Spotlight v2 arms' leaves
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Merge remote-tracking branch 'origin/dynacell-models' into dynacell-spotlight-topology-loss
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test(viscy-utils): pin the SAUNA-weighted Dice and its weight map
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docs(viscy-utils): describe the sauna mode as a SAUNA-map-weighted Dice
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feat(dynacell): track the classical ER/mito fg_mask writer with provenance
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docs(dynacell): note the ER and mito topology arms in the leaf generator
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docs(viscy-utils): describe soft_skeleton as max-pool morphology in its test
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fix(dynacell): reject out-of-range shards in the fg_mask writer
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fix(dynacell): let fg_mask writer dry runs inspect stores with masks
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docs(dynacell): mark the existing ER/mito masks' backend as inferred
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