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3D augmentation and 2.1D U-Net - #27

Merged

mattersoflight merged 35 commits into

mainfrom

3d-augmentation

Aug 12, 2023

Merged

3D augmentation and 2.1D U-Net#27
mattersoflight merged 35 commits into
mainfrom
3d-augmentation

Commits on Aug 7, 2023
- training time z scaling augmentation
  ziw-liu
  committed
  97ff42a
- plotting script for network diagram
  ziw-liu
  committed
  7213692
Commits on Aug 9, 2023
- support different log level
  ziw-liu
  committed
  87c2e04
- fix multi-timepoint prediction writing
  ziw-liu
  committed
  9957e17
- add 2.1D U-Net
  ziw-liu
  committed
  e76988c
- cleanup
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  committed
  9ca8727
- fix datamodule arg parsing
  ziw-liu
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  2099489
- cache data in unique dir
  ziw-liu
  committed
  7688624
- ensure contiguous
  ziw-liu
  committed
  e9b3144
- fix diagram
  ziw-liu
  committed
  be7ad55
- fix shape normalization
  ziw-liu
  committed
  4595a74
- AdamW
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  2a47a2e
- depend on timm
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  f0b71f2
Commits on Aug 10, 2023
- link to microDL and paper
  
  mattersoflight
  authored and
  ziw-liu
  committed
  534a305
- bump iohub version (#25)
  ziw-liu
  committed
  abab7ba
- fix 0 depth when input is 1
  ziw-liu
  committed
  17b4850
- add 2D to engine
  ziw-liu
  committed
  9f55843
- normalize shape for 2D nets
  ziw-liu
  committed
  0e2b575
- fix args check
  ziw-liu
  committed
  7938096
- excercise 1
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  committed
  aee1ca0
- Merge branch '3d-augmentation' into dlmbl-2023
  ziw-liu
  committed
  795b2f8
- readme + dependencies tested with python 3.10 (#30)
  
  mattersoflight
  and
  ziw-liu
  authored
  7069b82
- tested data loading
  mattersoflight
  committed
  e19341c
- Merge branch 'dlmbl-2023' of https://github.com/mehta-lab/viscy into dlmbl-2023
  mattersoflight
  committed
  0fdd4a3
- fix HTML link
  ziw-liu
  committed
  b4dea72
- show examples from the batches as images
  mattersoflight
  committed
  d94b338
- Merge branch 'dlmbl-2023' of https://github.com/mehta-lab/viscy into dlmbl-2023
  mattersoflight
  committed
  79fd35f
- clarified data module
  mattersoflight
  committed
  413b429
- update pyramid dataset
  ziw-liu
  committed
  f8e2991
- format
  ziw-liu
  committed
  998bfde
- fix model arch
  ziw-liu
  committed
  b81fd0e
- fix device issue
  ziw-liu
  committed
  8420570
Commits on Aug 11, 2023
- small fixes and final comments on exercise 1
  mattersoflight
  committed
  a3fbd0b
Commits on Aug 12, 2023
- Merge pull request #29 from mehta-lab/dlmbl-2023
  mattersoflight
  authored
  da0606f
- Merge branch 'main' into 3d-augmentation
  mattersoflight
  authored
  4e2c8b6

Commits

Commits on Aug 7, 2023

Commits on Aug 9, 2023

Commits on Aug 10, 2023

Commits on Aug 11, 2023

Commits on Aug 12, 2023